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UBC Theses and Dissertations
Proteins that interact with ubiquitin-conjugating enzyme 2, UBC-2, in the nematode Caenorhabditis elegans Groombridge, Marieke Tina
Abstract
A major route for protein degradation occurs via the ubiquitin-proteasome pathway. Proteins are targeted for destruction by the proteasome through covalent ubiquitin attachment. This tagging system involves the concerted action of an ubiquitin-activating enzyme (El), an ubiquitin-conjugating enzyme (E2), and an ubiquitin ligase (E3), with the latter two being involved in achieving target specificity. UBC-2, an essential E2 in the nematode C. elegans, is a functional homolog of Saccharomyces cerevisiae UBC4, a member of a branch of ubiquitin-conjugating enzymes required for the degradation of short-lived and abnormal proteins. In order to identify proteins that interact with UBC-2, a yeast two-hybrid analysis was employed. Putative TJBC-2 interacting proteins identified include: a ubiquitin-like budding yeast DSK2 ortholog referred to as DSK-2, two RING finger proteins, a protein containing a FYVE domain, a calcium ATPase called MCA-1, and ubiquitin. Since DSK-2 represented 60% of the putative interactors isolated from the screen, this project focused on the interaction of UBC-2 and DSK-2, and demonstrated a novel interaction between an E2 and an ubiquitin-domain protein (UDP) in vitro. The ability of DSK-2 to bind polyubiquitin and itself was also demonstrated. RNA interference (RNAi) was employed in an attempt to determine the biological function of UBC-2 interacting proteins in vivo. RNAi with mca-1 produced a subtle body shortening phenotype, although genes encoding UBC-2 interacting proteins appear to be non-essential.
Item Metadata
Title |
Proteins that interact with ubiquitin-conjugating enzyme 2, UBC-2, in the nematode Caenorhabditis elegans
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Creator | |
Publisher |
University of British Columbia
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Date Issued |
2002
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Description |
A major route for protein degradation occurs via the ubiquitin-proteasome
pathway. Proteins are targeted for destruction by the proteasome through covalent
ubiquitin attachment. This tagging system involves the concerted action of an ubiquitin-activating
enzyme (El), an ubiquitin-conjugating enzyme (E2), and an ubiquitin ligase
(E3), with the latter two being involved in achieving target specificity. UBC-2, an
essential E2 in the nematode C. elegans, is a functional homolog of Saccharomyces
cerevisiae UBC4, a member of a branch of ubiquitin-conjugating enzymes required for
the degradation of short-lived and abnormal proteins. In order to identify proteins that
interact with UBC-2, a yeast two-hybrid analysis was employed. Putative TJBC-2
interacting proteins identified include: a ubiquitin-like budding yeast DSK2 ortholog
referred to as DSK-2, two RING finger proteins, a protein containing a FYVE domain, a
calcium ATPase called MCA-1, and ubiquitin. Since DSK-2 represented 60% of the
putative interactors isolated from the screen, this project focused on the interaction of
UBC-2 and DSK-2, and demonstrated a novel interaction between an E2 and an
ubiquitin-domain protein (UDP) in vitro. The ability of DSK-2 to bind polyubiquitin and
itself was also demonstrated. RNA interference (RNAi) was employed in an attempt to
determine the biological function of UBC-2 interacting proteins in vivo. RNAi with
mca-1 produced a subtle body shortening phenotype, although genes encoding UBC-2
interacting proteins appear to be non-essential.
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Extent |
9266740 bytes
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Genre | |
Type | |
File Format |
application/pdf
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Language |
eng
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Date Available |
2009-09-18
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Provider |
Vancouver : University of British Columbia Library
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Rights |
For non-commercial purposes only, such as research, private study and education. Additional conditions apply, see Terms of Use https://open.library.ubc.ca/terms_of_use.
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DOI |
10.14288/1.0090520
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URI | |
Degree | |
Program | |
Affiliation | |
Degree Grantor |
University of British Columbia
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Graduation Date |
2002-11
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Campus | |
Scholarly Level |
Graduate
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Aggregated Source Repository |
DSpace
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Item Media
Item Citations and Data
Rights
For non-commercial purposes only, such as research, private study and education. Additional conditions apply, see Terms of Use https://open.library.ubc.ca/terms_of_use.